PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104845.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 592aa    MW: 65214.5 Da    PI: 5.4295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09498546348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I +        Rt+ ++k++w+++l
   XP_009104845.1 498 AWTLSEVTQLVEGVAKYGAGKWSEIKKLSFsshSYRTPVDLKDKWRNLL 546
                      7**************************9999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.015491550IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13493552IPR009057Homeodomain-like
SMARTSM007171.9E-10495548IPR001005SANT/Myb domain
CDDcd116601.30E-20497547No hitNo description
SuperFamilySSF466892.15E-16497556IPR009057Homeodomain-like
PfamPF002492.7E-7498546IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGTVVGNVEE CREMFEGSAA QTRITPFSST NQIKNPVTYK LVRVAGDGRL VPATDEEIFE  60
VNETDMHTAS DACQSVGSLS AQGLPSQLEE TSQALLQSGC VEPSYTEQVN SQPEYNEQML  120
QKVEQDERLA MIHSPHMLSA PDANSQCCNE TNMFNEDHVH HDSSLQQPIP FSSDVQNGCN  180
VDQSNTVVPC SNAEASPKET AAPPATAQRP DFSLVRGEIC LNNLPIKALQ ETFKATFGRE  240
TTVKDKTWLK RRITMGLTNS CNVPTTNLRI TNSKLVGNQD KANDLTDDVR ATNLKDAPPS  300
STDNANGHSN ASGHSLTEDF SSEERAAKRV RKPTRRYIEE LSENDEKQPV VTSKDEKLSE  360
KSEVRSISVS LGKRVTVTRV VSLAGSEIEV PYVSLVRRSR PRENIMALME CHSSCLEAKA  420
SSGESNMLHK EVLKSASGPD QKESATSSSN NEEDVLTEVD QDMETENIDS SGNSSDDNNN  480
IGLPTMQGGG LRRKHHRAWT LSEVTQLVEG VAKYGAGKWS EIKKLSFSSH SYRTPVDLKD  540
KWRNLLRTNF AQSPSNIMGS LKKHGSMDIP MQILLQVREL AEKQALVPPN HR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.241771e-128flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104845.10.0PREDICTED: uncharacterized protein LOC103830781 isoform X1
TrEMBLA0A397YW390.0A0A397YW39_BRACM; Uncharacterized protein
TrEMBLM4CI370.0M4CI37_BRARP; Uncharacterized protein
STRINGBra003870.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6