PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104846.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 586aa    MW: 64559.8 Da    PI: 5.5355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09492540348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I +        Rt+ ++k++w+++l
   XP_009104846.1 492 AWTLSEVTQLVEGVAKYGAGKWSEIKKLSFsshSYRTPVDLKDKWRNLL 540
                      7**************************9999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.015485544IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13487546IPR009057Homeodomain-like
SMARTSM007171.9E-10489542IPR001005SANT/Myb domain
CDDcd116601.26E-20491541No hitNo description
SuperFamilySSF466892.15E-16491550IPR009057Homeodomain-like
PfamPF002492.6E-7492540IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGTVVGNVEE CREMFEGSAA QTRITPFSST NQIKNPVTYK LVRVAGDGRL VPATDEEIFE  60
VNETDMHTAS DACQSVGSLS AQGLPSQLEE TSQALLQSGC VEPSYTEQYN EQMLQKVEQD  120
ERLAMIHSPH MLSAPDANSQ CCNETNMFNE DHVHHDSSLQ QPIPFSSDVQ NGCNVDQSNT  180
VVPCSNAEAS PKETAAPPAT AQRPDFSLVR GEICLNNLPI KALQETFKAT FGRETTVKDK  240
TWLKRRITMG LTNSCNVPTT NLRITNSKLV GNQDKANDLT DDVRATNLKD APPSSTDNAN  300
GHSNASGHSL TEDFSSEERA AKRVRKPTRR YIEELSENDE KQPVVTSKDE KLSEKSEVRS  360
ISVSLGKRVT VTRVVSLAGS EIEVPYVSLV RRSRPRENIM ALMECHSSCL EAKASSGESN  420
MLHKEVLKSA SGPDQKESAT SSSNNEEDVL TEVDQDMETE NIDSSGNSSD DNNNIGLPTM  480
QGGGLRRKHH RAWTLSEVTQ LVEGVAKYGA GKWSEIKKLS FSSHSYRTPV DLKDKWRNLL  540
RTNFAQSPSN IMGSLKKHGS MDIPMQILLQ VRELAEKQAL VPPNHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.241771e-128flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104846.10.0PREDICTED: uncharacterized protein LOC103830781 isoform X2
TrEMBLA0A397YW390.0A0A397YW39_BRACM; Uncharacterized protein
TrEMBLM4CI370.0M4CI37_BRARP; Uncharacterized protein
STRINGBra003870.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6