PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104861.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 243aa    MW: 27318.4 Da    PI: 5.1502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1974125156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     s y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  XP_009104861.1  74 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 125
                     569*******.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-3174133No hitNo description
SuperFamilySSF541712.35E-2274133IPR016177DNA-binding domain
PfamPF008472.8E-1275124IPR001471AP2/ERF domain
PROSITE profilePS5103223.97375132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3175133IPR001471AP2/ERF domain
SMARTSM003801.0E-3675138IPR001471AP2/ERF domain
PRINTSPR003672.7E-117687IPR001471AP2/ERF domain
PRINTSPR003672.7E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MCGGAVIADY ITPSRSSRSS KSTWRRDNDV VDLTLDDFES ENEDIYGFST AKPAAPLRRS  60
SPPQEDRRKK KKSSEYRGIR RRPWGRWAAE IRDPIKGVRV WLGTFNTAED AARAYDLEAK  120
RIRGAKAKLN FPNESPSRKR KASSSSSPQP QVKIEEKQEV AVASSLWEGD TIQVDTQWLE  180
DAIKGGEKEG KRQKGCDGEG DVNALLSEEL LAFEKETECF FQMPFMEGGS SVFEGDDVLD  240
LWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2272132263ATERF1
3gcc_A4e-2272132263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571DRRKKKK
26671RRKKKK
36782RKKKKSSEYRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.271390.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104861.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895750.0AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104861.11e-178PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T52e-61ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLM4CI501e-176M4CI50_BRARP; Uncharacterized protein
STRINGBra003883.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.22e-67ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]