PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104862.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24159.7 Da    PI: 8.1771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.9e-225098149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs   ++y +
  XP_009104862.1 50 KEIQEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYVF 98
                    67999************************************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.86642102IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-2642101IPR002100Transcription factor, MADS-box
CDDcd001206.09E-284399No hitNo description
SuperFamilySSF554551.57E-2243110IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-194464IPR002100Transcription factor, MADS-box
PfamPF003191.5E-215298IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-196479IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-1979100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MENGEASLIT CLPFKEQKPM QKPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV  60
TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYVFGN VNTLIESYLR KTPVMLRSYY  120
GGDVAAGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMG GDPTVQMNAQ  180
ICPDLMAPVN WKLMDENLAV RNDQGQAGYD GY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895750.0AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104862.11e-158PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_013651170.11e-158agamous-like MADS-box protein AGL61
TrEMBLA0A3P6BWN21e-156A0A3P6BWN2_BRACM; Uncharacterized protein
TrEMBLM4CI511e-156M4CI51_BRARP; Uncharacterized protein
STRINGBra003884.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.14e-71M-type_MADS family protein