PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104928.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 165aa    MW: 18473 Da    PI: 10.3961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1982136155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  XP_009104928.1  82 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 136
                     59********.**********54433367**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.7E-361163IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.27E-2482143No hitNo description
PROSITE profilePS5103221.54983144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2783144IPR001471AP2/ERF domain
PfamPF008472.2E-1383136IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1983145IPR016177DNA-binding domain
SMARTSM003804.0E-3083150IPR001471AP2/ERF domain
PRINTSPR003672.3E-118495IPR001471AP2/ERF domain
PRINTSPR003672.3E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EEEADQLSEP SLARRRGKRL VKEIVIDSSD SDNKLDVCKT  60
RFKIRIPPEF LKAATTEKKN KKKFRGVRQR PWGKWAAEIR CGRALKGRRD RLWLGTFDTA  120
EEAALAYDNA AVQLIGPHAP TNFSFPAENH EVKMVAGESA VARGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17831571480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.226200.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894010.0AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.11e-118PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9955e-84ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A3P6BX001e-117A0A3P6BX00_BRACM; Uncharacterized protein
TrEMBLM4CIA31e-117M4CIA3_BRARP; Uncharacterized protein
STRINGBra003936.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.13e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]