PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104994.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 339aa    MW: 38758.8 Da    PI: 6.7926
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-322982255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  XP_009104994.1 29 PRLKWTCELHHRFVEAVNQLGGPNKATPKSLMKAMEIPGLTLYHLKSHLQKYRL 82
                    9****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-282682IPR009057Homeodomain-like
SuperFamilySSF466892.51E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-222883IPR006447Myb domain, plants
PfamPF002496.9E-73081IPR001005SANT/Myb domain
PfamPF143792.3E-19130177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCLLMASNTN NGNNQKTKMS LVLSTDANPR LKWTCELHHR FVEAVNQLGG PNKATPKSLM  60
KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NRLEVSSALE TQEAESGNYS RDFRGSVNEE  120
NNNPANEGLK ITEALQLQTE VQKKLHEQIE VVQRNLQVKI EAQGKYLQSV LMKAQQTLAG  180
YTSSTLGMDF SRTKLSRFAS LVNPSSSFSE LTQVEEYEEE AEDARESFLY RKKTENRGIK  240
LLRCSVESFL ESSESSETKR NNDNDERISV ELPLMEIKSE VMTNKKKRNH NDVVCMECQL  300
LKKIDFEVDD DEQELKLSLN SYKKNYGDVP EPKKRLGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104994.10.0PREDICTED: myb family transcription factor PHL8-like isoform X1
SwissprotF4I2741e-148PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A3P6BJM70.0A0A3P6BJM7_BRACM; Uncharacterized protein
STRINGBra003993.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-148G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]