PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105129.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 988aa    MW: 109875 Da    PI: 5.916
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.69.5e-53121273117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk+ e++ iL+n+e++elt++++++p+sgsl Lyn++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah+e++p+fqr
  XP_009105129.1  12 QEaQTRWLKPPEVYFILKNHERYELTHKAPHKPTSGSLCLYNKRVLKFFRKDGHHWRKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHDPSFQR 106
                     6669******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     r++w+L+ e+++ivlvhy++v
  XP_009105129.1 107 RIFWMLDLEYDHIVLVHYRDV 127
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.0257133IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038599.1E-4513127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.1E-9444535IPR013783Immunoglobulin-like fold
PfamPF018337.5E-10448531IPR002909IPT domain
SuperFamilySSF812967.56E-18448532IPR014756Immunoglobulin E-set
CDDcd001024.93E-8448533No hitNo description
Gene3DG3DSA:1.25.40.208.2E-15624720IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91626718IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-15627720IPR020683Ankyrin repeat-containing domain
CDDcd002046.36E-13646718No hitNo description
PfamPF127963.6E-7647719IPR020683Ankyrin repeat-containing domain
SMARTSM002480.018659688IPR002110Ankyrin repeat
PROSITE profilePS5008810.686659691IPR002110Ankyrin repeat
SMARTSM002483500698727IPR002110Ankyrin repeat
SMARTSM0001511772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.004773801IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.27E-11773870IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.51819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334820846IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042821840IPR000048IQ motif, EF-hand binding site
SMARTSM000155.4E-4842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.7843867IPR000048IQ motif, EF-hand binding site
PfamPF006129.1E-5844864IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MQSEYEIRTL NQEAQTRWLK PPEVYFILKN HERYELTHKA PHKPTSGSLC LYNKRVLKFF  60
RKDGHHWRKK RDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DPSFQRRIFW MLDLEYDHIV  120
LVHYRDVSDA KEGKQSSGTV LQFSLKPSTL FSSPSYSHHI GDSSTDIQQQ HSEANSGVVF  180
SSNGGEEGSG SSYEFENREA IKRLEVQLSL GDDNNVVQNE SLDGLQFLDF STDLDHLVPP  240
PATIHQRPES SSKLGRCYGG YVGPQCNVGP PLYSQNQSLD SLLSLEYIKD MNQLAQPEAG  300
QQRQESNRLE RSYGGYIGTE YHPNNLMLVN NGSGGSGGSG ESWKDVLEAC GASIALNSQG  360
STPSSAKVLL SGMQEDSNWT YINQADQATL LLPQELDSSL QLPPPCYSEL RAPENNGYYN  420
TMLDDEGQTG PPLEQVMNPT VAYNQKFTIQ DISPEWGYAN ETTKVIIIGS FLCDPTESTW  480
ACMFGNAQVP FEIVKEGVIR CQAPPCGPGK VNLCITSGDG LSCSQIVEFE YRDKPDDRSS  540
PRSSPDVLLL LVKFVQTLLL DRKGNLEPNT DDDEWRRIID KIRDGTATSS STVDWLLQEL  600
LKDKLATWLS SRSQDKDQTS CSLSKQEQGI IHMVAGLGFD WALSPILGHG VSIDFRDDNG  660
WSALHWAAQL GSEKMVAALI ASGASAGAVT DPNTQDPVGK TPASIAASNG HKGLAGYLSE  720
VALTNHLSSL TLEETEDSIE SARAEAEIAV KSIAGKSHPV NDDPQSLAAL KNAAEAAARI  780
QAAFRAHSFR KRQQREADMY ACLKEYGIYA DMSKQNVRNY HSAALSIQKK YRGYKGRKEF  840
LTKRQKAIMI QAHVRGYQTR KQYKVICWAV GMLDKVILRW RRKGVGLKGF RQDVESGEDS  900
EDEDILRVFR KQKVEGAVNE AFSRVMSMTR TPEARQQYHR VLTTYCKKKA ELGKTETLGI  960
GGSGGGFEDD DALFDIADME DDHLFSLP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105129.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105129.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A397YZ200.0A0A397YZ20_BRACM; Uncharacterized protein
STRINGBra004096.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]