PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105131.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 347aa MW: 39380 Da PI: 6.1198

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.7	8.5e-38	85	223	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg..... 88 a+kkdrhskihT++g+RdRRvRls+e+ ++fFdLqd+LGfdk+s+t++WLl+++ + i el++ + +++ +++ +++ ++ ++ g XP_009105131.1 85 AVKKDRHSKIHTAQGLRDRRVRLSIEISRQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEKKLNNNVEdfgNDGGNVVHEE-DNVGdnsfv 178 89**************************************************************444442223332222222222.222234556 PP TCP 89 .........kaaksaakskksqksaasalnlak.esrakararar 123 ++ + k+ +++k++++++n++ sraka+ +a+ XP_009105131.1 179 ygsspysfeEEVLCEVKKAEKRKKKTEMSNISSkGSRAKAKGKAK 223 777888886445555577778888888888887799999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-36	86	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.583	87	145	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM 60 AFNSNNVMNQ QGFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIE ISRQFFDLQD 120 MLGFDKASET LDWLLKKSRR GINELVQEKK LNNNVEDFGN DGGNVVHEED NVGDNSFVYG 180 SSPYSFEEEV LCEVKKAEKR KKKTEMSNIS SKGSRAKAKG KAKGITIDMT NDHPETASEI 240 IQTEIMDPFK RSIIFNEGEE MTHSFYKESI QESDNHECIT KKKVNLPMNM DQGYNQHYGA 300 LMLKDQGSSS NYNAILPQNF DCDYNPNPFI DQLFCGVTNT NFFRGFP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM  60
AFNSNNVMNQ QGFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIE ISRQFFDLQD  120
MLGFDKASET LDWLLKKSRR GINELVQEKK LNNNVEDFGN DGGNVVHEED NVGDNSFVYG  180
SSPYSFEEEV LCEVKKAEKR KKKTEMSNIS SKGSRAKAKG KAKGITIDMT NDHPETASEI  240
IQTEIMDPFK RSIIFNEGEE MTHSFYKESI QESDNHECIT KKKVNLPMNM DQGYNQHYGA  300
LMLKDQGSSS NYNAILPQNF DCDYNPNPFI DQLFCGVTNT NFFRGFP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105131.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105131.1	0.0	PREDICTED: transcription factor TCP1-like
Refseq	XP_018508584.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-152	TCP1_ARATH; Transcription factor TCP1
TrEMBL	M4CIR3	0.0	M4CIR3_BRARP; Uncharacterized protein
STRING	Bra004097.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-139	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]