PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105150.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 332aa    MW: 36940.9 Da    PI: 4.8107
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573124.54.8e-39126214297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hdqk++ l+k+iW
  XP_009105150.1 126 AFQRLWTEDDEIAVLQGMIDFKKDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQKSYRLCKSIW 213
                     69**************************************************************998776.......****************** PP

          DUF573  97 g 97 
                     g
  XP_009105150.1 214 G 214
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-31127214IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTKKRNPLEN PPAASSSDDD DDEADSSAGE EEEEVNDSSS EEEEEEDQPN PPSSSAVTIA  60
IPGKTTSASD SVSGSETETD SESDTKKDKS PPPATKSGTK RPSEGTSKEA NSKRAKIGED  120
SKKPAAFQRL WTEDDEIAVL QGMIDFKKDT GNSPYDDTNA YYDYIKKSIS FEVSKNQFMD  180
KLRSLKKKYM GKEKPSFTKP HDQKSYRLCK SIWGPEGMVL ESNGKKTKKV GSVKQQELSF  240
ASSPNGKTVD DGGDMYDWFE KSFLVRGIAG FGVDESYVKQ RWRLVPVETK RKVEEKVKML  300
QAKEIEFVLQ KTEILHEVTS LIAEASKNKP LE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.88340.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105150.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-107STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLM4ERH70.0M4ERH7_BRARP; Uncharacterized protein
STRINGBra031402.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-88DNA-binding storekeeper protein-related transcriptional regulator