PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105202.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 247aa MW: 27946.7 Da PI: 8.7454

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl XP_009105202.1 10 KGAWTAEEDNLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP
2	Myb_DNA-binding	45.3	2e-14	63	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +E +ll +++k+lG++ W++Ia +++ gRt++++k++w+++l XP_009105202.1 63 RGKLNSDEVDLLMRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 6777789*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.678	5	61	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-22	5	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.66E-28	7	104	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-15	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-16	10	57	IPR001005	SANT/Myb domain
CDD	cd00167	5.49E-11	12	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-21	60	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.561	62	112	IPR017930	Myb domain
SMART	SM00717	5.3E-13	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-13	63	108	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-9	69	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEGSSQGLKK GAWTAEEDNL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS 60 IKRGKLNSDE VDLLMRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KHEPGCKTQM 120 KKRNIPCSYT TPAQKIDVFK PRPRSFTVNS GCSHNNGMPE ADIVPLCLGH NDTNNVSENI 180 ITCNKDDDKS ELVSHLMDGQ NRWWESLLDE SQDPAALFPE TTAIKKGATS AFDVEQLWSL 240 LDGETGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-21	8	111	5	107	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed only in leaves and siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269\|PubMed:11148285, ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105202.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269\|PubMed:17053893, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM403450	0.0	KM403450.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105202.1	0.0	PREDICTED: transcription factor MYB114
Swissprot	Q9ZTC3	1e-121	MYB90_ARATH; Transcription factor MYB90
TrEMBL	A0A3P6B886	0.0	A0A3P6B886_BRACM; Uncharacterized protein
TrEMBL	M4CIX8	0.0	M4CIX8_BRARP; Uncharacterized protein
STRING	Bra004162.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66390.1	1e-124	myb domain protein 90

Publications ? help Back to Top
Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2. New Phytol., 2015. 206(1): p. 422-35 [PMID:25425527] Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Nemie-Feyissa D,Heidari B,Blaise M,Lillo C Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis. Phytochemistry, 2015. 111: p. 21-6 [PMID:25659750] Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana. PLoS ONE, 2015. 10(11): p. e0143212 [PMID:26588092] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275] Li N, et al. The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato. Funct. Integr. Genomics, 2018. 18(3): p. 341-353 [PMID:29372433]