PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105263.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 341aa MW: 38786.3 Da PI: 6.5294

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	2.9e-39	84	224	2	127
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg.. 88 a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ ++ ++++ ++++++ ++ + XP_009105263.1 84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEKNLNNTDEdfgnigGEVEEEEDGD----Ksf 174 89************************************************************554442222233333333333333....134 PP TCP 89 ..........kaaksaakskksqksaasalnlak.esrakarararertr 127 ++ + + k+ ++++++ + +n++ esrakar +a+e t XP_009105263.1 175 lygsspdsweEEVACEVKKAQKRNKKIELSNISSkESRAKARGKAKEMTY 224 45667777754444444666666666666777667********99764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-39	85	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.908	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MSSSNNDYIN GNNGVYPLSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLMNYMS 60 FSSNRAVNQQ GFKIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM 120 LGFDKASKTL DWLLKKSRRA IKELVQEKNL NNTDEDFGNI GGEVEEEEDG DKSFLYGSSP 180 DSWEEEVACE VKKAQKRNKK IELSNISSKE SRAKARGKAK EMTYDHPETI SEITQTETMD 240 PLKRSIISNE GEHMTHSLYK EATQEFDSQE CILSKTKVNL PTNMDQIYNQ NYGTSMLKDQ 300 GSSSNYNNIL PQNLDFYYDQ NSFVDQPFCA VTKTSFPRGF P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-13	91	144	1	54	Putative transcription factor PCF6
5zkt_B	4e-13	91	144	1	54	Putative transcription factor PCF6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	VKKAQKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105263.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105263.1	0.0	PREDICTED: transcription factor TCP1
Refseq	XP_009105264.1	0.0	PREDICTED: transcription factor TCP1
Swissprot	Q9FYG7	1e-158	TCP1_ARATH; Transcription factor TCP1
TrEMBL	M4CJ28	0.0	M4CJ28_BRARP; Uncharacterized protein
STRING	Bra004212.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-155	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]