PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105274.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 992aa    MW: 110013 Da    PI: 6.8455
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.22.6e-52121273117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk+ e++ iL n+e+++lt +++++p+sgs++Lyn++++++frkDG++wk+kkdg+++ E+he+LKvg+ve+l+cyYah+e++p+fqr
  XP_009105274.1  12 REaHTRWLKPPEVHFILLNHERYRLTDKPPHKPSSGSVLLYNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKVGNVEALQCYYAHGEHEPSFQR 106
                     55589****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     r+yw+L+ e+e+i lvhy++v
  XP_009105274.1 107 RIYWILDPEYEHIALVHYRDV 127
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143771.5327133IPR005559CG-1 DNA-binding domain
SMARTSM010766.8E-7110128IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4413127IPR005559CG-1 DNA-binding domain
CDDcd001021.11E-6458543No hitNo description
PfamPF018333.2E-9458541IPR002909IPT domain
Gene3DG3DSA:2.60.40.102.3E-8458545IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.78E-17458542IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.7E-15630727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512632724IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-15634727IPR020683Ankyrin repeat-containing domain
CDDcd002044.08E-13637724No hitNo description
PfamPF127963.0E-7653725IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021665694IPR002110Ankyrin repeat
PROSITE profilePS5008810.766665697IPR002110Ankyrin repeat
SMARTSM0001521776798IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657777805IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-7778884IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.78832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236833862IPR000048IQ motif, EF-hand binding site
PfamPF006120.012834853IPR000048IQ motif, EF-hand binding site
SMARTSM000153.1E-4855877IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993856880IPR000048IQ motif, EF-hand binding site
PfamPF006128.2E-5857877IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MQSEYDVSTL YREAHTRWLK PPEVHFILLN HERYRLTDKP PHKPSSGSVL LYNKRVLKFF  60
RKDGHQWKRK KDGRAIAEAH ERLKVGNVEA LQCYYAHGEH EPSFQRRIYW ILDPEYEHIA  120
LVHYRDVSDG KEVKQQTGGT VLHFSPNPST LGSIGTQNAS YSHCIGVSSE IHQQQHSSAS  180
AGNVEVNSDV FCNSNGTETS KGSGSLSYEF ETREALKRLE EQLSLGDDDN VVQNESLDGL  240
QFLGFSKTDI DHHLVPPATV HQRPESSSKL GRCYGGYVGG AQCNVSTVGS PLHSLNSLLS  300
LECTEDINAQ PAAGHQRAEN NRLERCYGGY IGAEYHSNNL MLVKNDSGGS GGSGDQKAES  360
WKDVLEACEA SIALNSEGST PSSAKGLLTR MQEDSNLSYS NQADQATLLL PQELGPSFEL  420
PTRYSELGAL ANNANNSRME LPFEQVMNQT VAHKQKFTIQ DISPEWGYAN ETTKVMIIGS  480
FLCDPKESTW SCMFGSTEVP FEIIKEGVIR CQAPPCGPGK VNLCIASGDG LSCSQIKEFE  540
YRDKPDDTSC PWSSRDELLL LVRLVQTLVS DSKSNLEPWS HILETVLDGT ATSSSTVDWL  600
LQELVKEKLD AWLSSRPRQV EDQTSCCSLS KQEQGIIHMV AGLGFEWALH PILSRGVSVD  660
FRDINGWSAL HWAARFGSEK MVAALIASGA SAGAVTDPTA QDPAGKTAAS IAASNGHKGL  720
AGYLSEVALT NHLSSLTLEE TEKSKETAQL QAEVTLNSIS ERSPHSLKDS LAAVRNAAQA  780
VARIQAAFRA HSFRKRQQRE AAMAAYFQEY GIYADIKGIS AISKVAPGNV KNYHSAALSI  840
QKNYRRYKRR KEFLSLRKKV VKIQAHVRGY QIRKHYKVIC WAVGILDKVV LRWRRKGAGL  900
RGFRQDVEDS EEEDILKVFR KQKVDVAVKE AFSRVLSMAK SPEARQQYHR VLKRYCQTKA  960
ELGKTETLGA GGDEDEDLFD LADMEDDSLF AL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1844851RRYKRRKE
2845858RYKRRKEFLSLRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105274.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105274.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLM4CJ330.0M4CJ33_BRARP; Uncharacterized protein
STRINGBra004217.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]