PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105381.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 320aa    MW: 37134.9 Da    PI: 5.485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.41.9e-082012610128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                     tde +++ yL+   ++ +   ee++++ d+++ +P++     +ae+  + f  +r ++     r+n   ++  W+  g+dk ++++      + k
  XP_009105381.1  20 TDEKMMSIYLQSINDNGESWPEEFMEDRDVFTKNPSEVF---EAENPFVVFVYPRTEAC---GRTNGCGSD-GWRIIGHDKLIKHE-----DTGK 102
                     89**********999998666689**************5...33434445555555544...478886554.5**********993.....3469 PP

             NAM 105 tLvfykgrapkgektdWvmheyrl 128
                     +L f  +++ +g k +Wvm++yrl
  XP_009105381.1 103 ILKFCGETKARGYKRTWVMQQYRL 126
                     *****99***************98 PP
2NAM29.32.5e-0920130233128
             NAM  33 vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgrapkge 117
                     +  + d+y+v+P++L  +   +++ + +  F++r ++           +sg+W+   +d++++s ++e++g k+++ fy        +  + + +
  XP_009105381.1 201 CYVTNDVYRVHPSTLVdHeDKRSTASGLCVFANRTEACG--YT--DGCESGRWRIVEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIVDGEQV 291
                     456679*********732233334457799999888764..33..33579*****************************5553332212233345 PP

             NAM 118 ktdWvmheyrl 128
                       +W+m+eyrl
  XP_009105381.1 292 LRTWIMEEYRL 302
                     678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.04311144IPR003441NAC domain
SuperFamilySSF1019411.83E-1620142IPR003441NAC domain
PROSITE profilePS5100515.329169318IPR003441NAC domain
SuperFamilySSF1019411.7E-20185316IPR003441NAC domain
PfamPF023652.9E-4231302IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEIRAAKYP DVKDDHSKAT DEKMMSIYLQ SINDNGESWP EEFMEDRDVF TKNPSEVFEA  60
ENPFVVFVYP RTEACGRTNG CGSDGWRIIG HDKLIKHEDT GKILKFCGET KARGYKRTWV  120
MQQYRLPSKW SPKQDHVVCK IQLLFQTEIS FLLAKHFTYS ADPLPATQSL TAYGIRLANQ  180
QDDGAYYLQV IFDSGGNEWP CYVTNDVYRV HPSTLVDHED KRSTASGLCV FANRTEACGY  240
TDGCESGRWR IVEEDNAIFS MSHEVMGYKR VFKFYEEDKG RYFDIVDGEQ VLRTWIMEEY  300
RLVEDAMKDK VLCVIKRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105381.10.0PREDICTED: uncharacterized protein LOC103831246
TrEMBLM4ERU10.0M4ERU1_BRARP; Uncharacterized protein
STRINGBra031518.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-109NAC domain containing protein 23