PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105503.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 134aa    MW: 16088.4 Da    PI: 8.8916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.74.3e-1051148117
             NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                      P ++e+v +yLk  +++++   ++++++ d+y v+P++  + +++    ++ ++  F++r +++  g ++    +sg W+  g+dk ++s+ ++
  XP_009105503.1   5 YPPEDEIVGYYLKMMIDKRNEWPSNFLRSEDVYCVNPRTHFN-TQEplilHDGRYLPFVNRTESS--G-KTD-GCDSGCWRIMGRDKLIKSEkNE 94 
                     58899************999666688***********98742.2222232334445566665543..2.333.4579*************98567 PP

             NAM  98 elvglkktLvfykgrapkge 117
                     e  g kk++ f +++++k++
  XP_009105503.1  95 EILGFKKVFKFCEKNEKKPK 114
                     779*********87776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.41134IPR003441NAC domain
SuperFamilySSF1019411.05E-165121IPR003441NAC domain
PfamPF023653.3E-65111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTMIYPPEDE IVGYYLKMMI DKRNEWPSNF LRSEDVYCVN PRTHFNTQEP LILHDGRYLP  60
FVNRTESSGK TDGCDSGCWR IMGRDKLIKS EKNEEILGFK KVFKFCEKNE KKPKSFFKFS  120
WEKAEEKEKR RARD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017511e-31HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105503.22e-95PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103831350
TrEMBLA0A3P5ZXC74e-91A0A3P5ZXC7_BRACM; Uncharacterized protein
STRINGBo1g093090.19e-88(Brassica oleracea)
STRINGBo3g081220.19e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.11e-46NAC family protein