PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105599.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 170aa MW: 19200.9 Da PI: 9.7629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.3e-10	116	160	3	52
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +a n++E+rRR++i++++e L++l P++ kK + a++L ++ I+ XP_009105599.1 116 EARNIAEKRRRADIKTKIEHLKQLTPNC-----KKRDIASTLDCIIDNIR 160 578************************9.....89999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-9	110	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-11	110	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.262	113	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-7	116	164	No hit	No description
Pfam	PF00010	9.6E-7	117	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-7	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MDKDRESLQF WSSLLYSLAD SDPKDGLFPE ISSPIMVMST SMATDVSPKP SNAPGDGDRD 60 EARRFLAGQG KAIAETGDKI IHEGGQRSAE KQIEVEKKVG AIKETKNLGK RPRTNEARNI 120 AEKRRRADIK TKIEHLKQLT PNCKKRDIAS TLDCIIDNIR WMKHYVERHV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105599.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105599.1	1e-124	PREDICTED: putative transcription factor bHLH056
TrEMBL	A0A078F1W7	3e-77	A0A078F1W7_BRANA; BnaA07g24700D protein
TrEMBL	A0A3P6BJX1	2e-77	A0A3P6BJX1_BRACM; Uncharacterized protein
STRING	Bo6g097200.1	6e-78	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15740	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.2	9e-10	bHLH family protein