PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105600.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 213aa    MW: 24187.4 Da    PI: 8.0235
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13127151226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+y d C+FaHg
  XP_009105600.1 127 KTELCNKWQETGTCPYADHCQFAHG 151
                     9***********************8 PP
2zf-CCCH19.41.9e-06164189126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++  C+yG rC+F H+
  XP_009105600.1 164 YKTEVCRMVLAGDVCSYGHRCHFRHS 189
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-17120158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10122157IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934125153IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-12159192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9159193IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84163191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENEIAPFTY SGSSAGMMNS HGESSGGVVA PSRSRSVMQQ RRQDMVNREA LCYTRLHEAS  60
LEAEVLRLEN TELRSLNLHL KKELDQLIRS SLHLSLGLQK VYVRGGKKEE EEEEEIEVEV  120
YNQGMTKTEL CNKWQETGTC PYADHCQFAH GIKELRPVIR HPRYKTEVCR MVLAGDVCSY  180
GHRCHFRHSL SDQAKLTAAG CKSNNKSSFK LVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-20127192570Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.204191e-132bud| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-129AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508455.19e-83PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F55e-61C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLM4CIL17e-76M4CIL1_BRARP; Uncharacterized protein
STRINGBra004045.1-P1e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-61C3H family protein