PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105772.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 196aa    MW: 21976.8 Da    PI: 9.7764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-143679348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl
   XP_009105772.1 36 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDDEVRIHWESYL 79
                     89******************.*********.***********9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.61E-152189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-192683IPR009057Homeodomain-like
PROSITE profilePS5129422.6322983IPR017930Myb domain
SMARTSM007173.1E-133381IPR001005SANT/Myb domain
CDDcd001672.71E-113679No hitNo description
PfamPF002491.9E-133679IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKESNFSKD EDDLILKLHA LLGNRWSLIA  60
GRLPGRTDDE VRIHWESYLE KKLMKMGIDP TNHRIYHHTN YTSRRFINAS YKKHETDIIS  120
DQSSSVSESC DMKLLPVSST NCSEANASSG NSRLPDLNIG LVPIKTVTSL PVGSLQEPSG  180
SSNHGSTSQE TLLLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-13148339108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791030.0JN379103.1 Brassica rapa subsp. oleifera myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105772.11e-144PREDICTED: myb-related protein 308
TrEMBLI6TGL91e-142I6TGL9_BRARO; Myb-like transcription factor 2
TrEMBLM4DI371e-142M4DI37_BRARP; Uncharacterized protein
STRINGBra016164.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.12e-83MYB-like 2