PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009105785.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 238aa MW: 27002.6 Da PI: 6.0051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.5e-07	63	116	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP s+ ++kK +i ++v YI +L XP_009105785.1 63 KKQERNANERLRRMRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVSYIPKL 116 67889**********************87888889************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-9	56	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.573	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-7	62	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.10E-4	63	121	No hit	No description
Pfam	PF00010	2.2E-4	63	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-4	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSDHQILESS LLDDLFHIPA ETIVEEFREK DDTFRAHSES KGKEVVIVLH DEDAHGSSSG 60 AAKKQERNAN ERLRRMRLHA SYLTLGTLLP DHSSSSKKKW CAPSIMDRVV SYIPKLLNEV 120 EELTLRKKKL VEAIESKKSQ RLERQDPHTL AISVLELGRS GDEAVVQISM EKEKEEEFSN 180 LLHVLEMQGS SILSASTSLV CRDQRVVCYN FHVKMDEKPC EGDDYITVLK NNIISSLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105785.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-38	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-38	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-38	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105785.1	1e-174	PREDICTED: uncharacterized protein LOC103831644 isoform X2
Swissprot	F4I8F9	5e-98	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A397YQW4	1e-165	A0A397YQW4_BRACM; Uncharacterized protein
STRING	Bra016156.1-P	1e-154	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-100	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]