PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105795.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Whirly
Protein Properties Length: 241aa    MW: 26184.8 Da    PI: 10.0774
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly207.31.8e-64611991139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     +++k++aal+v++v+ptf++++ gnl+++r+G++++++++a++erkydWekkq fals+tev++++++++++s+effhdp++k+sn+G+vrk+l+
  XP_009105795.1  61 AIFKGRAALSVEPVLPTFTKIEPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQLFALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKSLS 155
                     59********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     ++Pl+d sG+f++lsvt +++++n++++vPvskaefavl+s+++
  XP_009105795.1 156 IKPLADSSGYFFQLSVTDNIQNSNDRIVVPVSKAEFAVLKSAFS 199
                     *****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.1E-7250213IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-6453215IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.2E-6062197IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMKQARTLLS SRSLCNQSSS LFEGSSKSSA SRGFATWADS SATKRADAAK PSSGRVFAPY  60
AIFKGRAALS VEPVLPTFTK IEPGNLRIDR RGSVMMTFMP AVSERKYDWE KKQLFALSPT  120
EVGSVISMGP QDSSEFFHDP SMKSSNAGQV RKSLSIKPLA DSSGYFFQLS VTDNIQNSND  180
RIVVPVSKAE FAVLKSAFSF ALPHILGWDR ITGGDIGMAA QGIASLPKAD PMQLELEWGK  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-96472133168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-96472133168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-96472133168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-96472133168Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.15200.0flower
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105795.11e-177PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotQ8VYF71e-114WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLM4DI231e-173M4DI23_BRARP; Uncharacterized protein
STRINGBra016150.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-105WHIRLY 2