PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105818.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 139aa    MW: 15253.8 Da    PI: 5.6303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-141362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r++k +g+Wv+eIr+p +   r r +lg+f  ae+Aa a++ a  +l+ 
  XP_009105818.1 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSPAEGAAVAHDVAFYCLHR 62
                    8*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.80E-231276No hitNo description
Gene3DG3DSA:3.30.730.103.5E-231374IPR001471AP2/ERF domain
PfamPF008471.8E-61360IPR001471AP2/ERF domain
SMARTSM003803.8E-251380IPR001471AP2/ERF domain
PROSITE profilePS5103220.0861374IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-161373IPR016177DNA-binding domain
PRINTSPR003674.4E-81425IPR001471AP2/ERF domain
PRINTSPR003674.4E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSPAEGAA VAHDVAFYCL  60
HRPSTLDNEA FNFPHLLQPS LASNTSPKSI QKAASDAGMA VDAGFSLNND SASGGVEEGS  120
ERETLNISVY DYLEDDGRI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161629e-91AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161639e-91AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109999e-91BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148169e-91BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026849e-91CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105818.11e-100PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I89e-75ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLM4DI063e-99M4DI06_BRARP; Uncharacterized protein
STRINGBra016133.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]