PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105895.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 28599.8 Da    PI: 4.8873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1863113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+l+g
  XP_009105895.1  63 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDFEAKRLRG 113
                     569*******.**********72....46*******************99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-2263122IPR016177DNA-binding domain
PROSITE profilePS5103223.93364121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3064122IPR001471AP2/ERF domain
SMARTSM003803.3E-3764127IPR001471AP2/ERF domain
PfamPF008475.7E-1164113IPR001471AP2/ERF domain
CDDcd000185.66E-3065122No hitNo description
PRINTSPR003672.8E-116576IPR001471AP2/ERF domain
PRINTSPR003672.8E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAVISDY IAPRAGKPSW RRDDVVDLTL DDLEGDSQYY PWLGMKREDG TRRKKKTNKS  60
SSSEYRGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEDA ARAYDFEAKR LRGVKAKLNF  120
PNESPASSSR KRKASSPPPT QRPQVRKIEE KREDVDVLGG GCFDFLWEEN NNADTSQVDT  180
QWLEDVIIMG DDAEKRQKGY YDCEGNVDEL LSFQNETECF LQTPFMEGGN CGFSTSLTSL  240
LDEVNVMDLW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2160121163ATERF1
3gcc_A5e-2160121163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.271391e-72root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895751e-69AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105895.10.0PREDICTED: ethylene-responsive transcription factor ERF073
SwissprotQ8H0T57e-69ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLM4DHT60.0M4DHT6_BRARP; Uncharacterized protein
STRINGBra016063.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.31e-71ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]