PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105924.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 597aa    MW: 66323 Da    PI: 5.8667
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08503551348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E   lv++v ++G g W+ I +       +Rt  ++k++w+++l
   XP_009105924.1 503 AWTLTEVTTLVEGVSKYGAGKWSEIKKFSFsshSHRTSVDLKDKWRNLL 551
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.248496555IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13498557IPR009057Homeodomain-like
SMARTSM007171.0E-8500553IPR001005SANT/Myb domain
CDDcd116602.57E-21502552No hitNo description
SuperFamilySSF466892.37E-16502561IPR009057Homeodomain-like
PfamPF139218.3E-7504559No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MGTVVGTVED CREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHNASD ACQSLGYLPT EWSPSRLSQL EECSEVLNLG LLRSDNVEPS TEQLSSQPEY  120
SEELLQKAKQ DERLVMVSTP PDANIQFCNE NNMFDEDQVH HEPLPFSLDV QNGCDVNQTN  180
TVEPSCPKET ALPASAASQK PDFALVRGEI CLNDLPIKAL QETFRATFGR ETTVKDKTWL  240
KRRITMGLTK SFDVPTTNLT IKDNKLVGIK DKSNDVSDDV RATNVKEAPS SSAYHVNGHS  300
NASGRSLGVN HYWATEDFSS EERAAKRVRK PTRRYIEELE TDDKSVVTSK DQRLSEKSEV  360
RSMSVSLGKR VTVTRVVPLG GSEVEVPYVS HVRRSRPREN FMALMECHTN CLEAKGSARE  420
SNLLNSEVVS PGSVVKSASG PIQKEMQLAT SHNNTNEEYI PAEADQDMEP DHVDSSGNSS  480
DEYNNTGAPM MQGGGLRRKH HRAWTLTEVT TLVEGVSKYG AGKWSEIKKF SFSSHSHRTS  540
VDLKDKWRNL LRASFAQSPS NTMGSFKKHG SMHIPVEILL QVRELAEKQS LVPPNHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.241770.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105924.10.0PREDICTED: uncharacterized protein LOC103831770 isoform X1
TrEMBLM4DHR70.0M4DHR7_BRARP; Uncharacterized protein
STRINGBra016044.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6