PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105926.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 593aa    MW: 65883.5 Da    PI: 5.8667
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-08499547348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E   lv++v ++G g W+ I +       +Rt  ++k++w+++l
   XP_009105926.1 499 AWTLTEVTTLVEGVSKYGAGKWSEIKKFSFsshSHRTSVDLKDKWRNLL 547
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.248492551IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13494553IPR009057Homeodomain-like
SMARTSM007171.0E-8496549IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-16498557IPR009057Homeodomain-like
CDDcd116602.68E-21498548No hitNo description
PfamPF139218.2E-7500555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGTVVGTVED CREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHNASD ACQSLGYLPT EWSPSRLSQL EECSEGLLRS DNVEPSTEQL SSQPEYSEEL  120
LQKAKQDERL VMVSTPPDAN IQFCNENNMF DEDQVHHEPL PFSLDVQNGC DVNQTNTVEP  180
SCPKETALPA SAASQKPDFA LVRGEICLND LPIKALQETF RATFGRETTV KDKTWLKRRI  240
TMGLTKSFDV PTTNLTIKDN KLVGIKDKSN DVSDDVRATN VKEAPSSSAY HVNGHSNASG  300
RSLGVNHYWA TEDFSSEERA AKRVRKPTRR YIEELETDDK SVVTSKDQRL SEKSEVRSMS  360
VSLGKRVTVT RVVPLGGSEV EVPYVSHVRR SRPRENFMAL MECHTNCLEA KGSARESNLL  420
NSEVVSPGSV VKSASGPIQK EMQLATSHNN TNEEYIPAEA DQDMEPDHVD SSGNSSDEYN  480
NTGAPMMQGG GLRRKHHRAW TLTEVTTLVE GVSKYGAGKW SEIKKFSFSS HSHRTSVDLK  540
DKWRNLLRAS FAQSPSNTMG SFKKHGSMHI PVEILLQVRE LAEKQSLVPP NHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.241770.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105926.10.0PREDICTED: uncharacterized protein LOC103831770 isoform X3
TrEMBLM4DHR70.0M4DHR7_BRARP; Uncharacterized protein
STRINGBra016044.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6