PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106383.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 245aa    MW: 27008.7 Da    PI: 4.6956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-194191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  XP_009106383.1 41 PCYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 91
                    68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3242100IPR001471AP2/ERF domain
SMARTSM003801.7E-3642105IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2242100IPR016177DNA-binding domain
PROSITE profilePS5103222.9854299IPR001471AP2/ERF domain
PRINTSPR003678.4E-114354IPR001471AP2/ERF domain
CDDcd000189.63E-2343101No hitNo description
PRINTSPR003678.4E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTELSISSVQ QPSLVEEETH HHREDEETHR TNKKKRARPD PCYRGVRMRT WGKWVSEIRE  60
PRKKSRIWLG TFSTAEMAAR AHDAAALTIK GPSAVLNFPE LATFLPRPAS SSPRDVQAAA  120
AVAAAMDFSS SSSSAGVISD PTTVVPESQL SSSSSYLSFT SSSTLSPSSE EAASSTAEEL  180
SEIVELPSLE TSYDEPWSEF VYVDPAYPPS SPWYFNNCYS FYHHSDETGT SMGEPFDSSN  240
FCLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1843991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106383.11e-179PREDICTED: ethylene-responsive transcription factor ERF037
SwissprotO806543e-99ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLM4DGR11e-177M4DGR1_BRARP; Uncharacterized protein
STRINGBra015686.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.11e-71ERF family protein