PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106496.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 191aa MW: 20353.1 Da PI: 10.968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	37	95	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RK++ + L++ ++L +e ++ e++ ++++ k+++++ XP_009106496.1 37 RKRKRLESNRESARRSRMRKREHLVGLTTQLEQLRKEIRKATTEVDVTTQHYTKMEAKN 95 5779**************************************************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-13	30	97	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-8	35	85	No hit	No description
PROSITE profile	PS50217	9.967	35	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	37	91	No hit	No description
Pfam	PF00170	3.1E-8	37	95	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.40E-15	38	88	No hit	No description
PROSITE pattern	PS00036	0	40	55	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MMNKPEMRPC LTCNWSPVLP TSLPNSDRVQ RDLINERKRK RLESNRESAR RSRMRKREHL 60 VGLTTQLEQL RKEIRKATTE VDVTTQHYTK MEAKNSVMRA QVTELNHRLN SLNQIIAFPE 120 SYSSAAGGFG TVTGGTAAGG FGMETAPSAA GGFGMATAPS AAGGFGMATA PSAAGGFGTV 180 RGGTAAGGFG M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	57	RRSRMRKRE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269\|PubMed:23461773}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106496.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189493	0.0	AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106496.1	1e-139	PREDICTED: bZIP transcription factor 44
Swissprot	C0Z2L5	1e-42	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A397YVS4	1e-125	A0A397YVS4_BRACM; Uncharacterized protein
STRING	Bra015847.1-P	1e-116	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27100	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	4e-30	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]