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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009106942.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
Trihelix |
| Protein Properties |
Length: 315aa MW: 34712.2 Da PI: 9.9961 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009106942.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 46.2 | 1.2e-14 | 78 | 160 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ + ++g lk+++W ev++ + + +++++ +qCk++++ ++k+yk++k+ ++ s++++f++le
XP_009106942.1 78 CWSEEATRVLINAWGDRFAEPGKGTLKQQQWHEVAEIVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKKGP------SKWAFFKKLE 160
7*************************************88888889**********************99996......58******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MEEEDETQSS PVDSSSPPAP SSPPVLPASN VTVASVTKPP PSSQSPSRNA LALAVHTPSV 60
TVNKNGRIGG GGGGRDDCWS EEATRVLINA WGDRFAEPGK GTLKQQQWHE VAEIVNGSGQ 120
CKYTKTDVQC KNRIDTVKKK YKQEKAKKGP SKWAFFKKLE SLIGGGGGGK APVVGARSSG 180
PMRWHFRKRS ASETESESEP EHSAESLPPP LQPLPKRLKM GESGVGEVAK AILGFTEAYE 240
KAESGKIKLM LELEKERMKF VKEMELQRMQ FLRTQMEITQ KNQEEERGKL RINDDDDDRN 300
VKNNGDKKRK TRGNK
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ973845 | 4e-70 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
