PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106951.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 237aa    MW: 25390.5 Da    PI: 5.1325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59e-1572121155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  XP_009106951.1  72 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 121
                     5699**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1772129IPR016177DNA-binding domain
SMARTSM003802.2E-2573135IPR001471AP2/ERF domain
PROSITE profilePS5103219.30973129IPR001471AP2/ERF domain
CDDcd000181.82E-1574129No hitNo description
PRINTSPR003671.1E-57485IPR001471AP2/ERF domain
PfamPF008472.6E-874121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-2574129IPR001471AP2/ERF domain
PRINTSPR003671.1E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSNISDSPTT GNKQMTTFPL ASVALPSKPS DHQSPQSSPG SSSSPSPSPR PSHSAGGSST  60
KRTTTGLSGR HSFFRGIRLR NGKWVSEIRE PRKTTRIWLG TYPVPEMAAA AYDVAALALK  120
GPDAVLNFPG LALTYVAPAS NSAADIRAAA ARAAETKQPD PGGVEKVMEP GQPGREEEEK  180
AMLSSLEFMD EEAMLDMPNL LTEMAEGMLM SPPRMINPTM EDDSLENHEG DSLWSYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1266129772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.58350.0bud| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106951.11e-172PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-101ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM4EHM61e-171M4EHM6_BRARP; Uncharacterized protein
STRINGBra028291.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-85ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]