PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107057.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 126aa    MW: 14504.7 Da    PI: 9.735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-148104299
                     EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +kvlt sd + +g+l+lpk+ +e++         +++++++++ d + +s+ v+l  +k++++y +++GWk+  ++ gLk+gD++ ++  + +++
  XP_009107057.1   8 EKVLTDSDLSVNGWLILPKNKMENIeknmgfP-MPRNGVQVKILD-NDKSYWVNL--NKHKSTYHIGSGWKKIRDDRGLKTGDIIQLY--W-KST 95 
                     799*******************9888888752.345888999999.557777***..*******************************..5.444 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     +++++++++
  XP_009107057.1  96 KFLFSMCSS 104
                     558888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-152111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-126102No hitNo description
PROSITE profilePS508639.1927105IPR003340B3 DNA binding domain
SMARTSM010198.4E-127105IPR003340B3 DNA binding domain
PfamPF023621.7E-118104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDPNMMIEKV LTDSDLSVNG WLILPKNKME NIEKNMGFPM PRNGVQVKIL DNDKSYWVNL  60
NKHKSTYHIG SGWKKIRDDR GLKTGDIIQL YWKSTKFLFS MCSSPKEEQA CQKGESSSSN  120
KTMGER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489546.11e-64PREDICTED: B3 domain-containing protein At1g08985-like
SwissprotQ8GWU11e-38Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLA0A397ZAE97e-68A0A397ZAE9_BRACM; Uncharacterized protein
STRINGBo3g092070.16e-61(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.14e-41B3 family protein