PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107147.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91739.2 Da    PI: 6.2755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009107147.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START164.48.1e-521613662205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g+++l 
  XP_009107147.1 161 IAEETLAEFISKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 254
                     7899******************************************************.7777777777****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.seqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+   +++pp  +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s
  XP_009107147.1 255 YMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKcGPSMPP-VQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYES 348
                     *************************************62678888.7************************************************ PP

                     HHHHHHHHHHHHTXXXXX CS
           START 188 glaegaktwvatlqrqce 205
                       + ++kt++a+l+++++
  XP_009107147.1 349 PKVLAQKTTMAALRQLKQ 366
                     **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
CDDcd000861.31E-161777No hitNo description
SuperFamilySSF466891.03E-161780IPR009057Homeodomain-like
PfamPF000465.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084823.893151376IPR002913START domain
CDDcd088754.05E-74155368No hitNo description
Gene3DG3DSA:3.30.530.202.5E-22160343IPR023393START-like domain
SuperFamilySSF559611.79E-36160369No hitNo description
SMARTSM002349.5E-39160367IPR002913START domain
PfamPF018522.8E-49161366IPR002913START domain
PfamPF086707.1E-52692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAMSYKDGKM GCMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH  120
TPNPTLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFI SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM  240
NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKCGPSMPPV  300
QHFVRAEMLP SGYLIRPCDG GGSIIHIVDH MDLEACSVPE VLRPLYESPK VLAQKTTMAA  360
LRQLKQIAQE SSQTNSSVNG WGRRPAALRA LSQRLSRGFN EAVNGFTDEG WSVIGDSMDD  420
VTITVNSSPD KLMGLNLTFS NGFAPVSNVV LCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYLAAA VKVGPCSARV GGFGGQVILP LAHTIEHEEF MEVIKLEGLG QSPEDAIVPR  540
DIFLLQLCSG MDENALGTCA ELIFAPIDAS FADDAPLLPS GFRIIPLDST KQEASSPNRT  600
LDLASALEIG PAGTTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARNYVRGII  660
ASVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRCYMGVELL NLNSEGNESI  720
LKNLWHHTDA IICCSMKAMP VFTFANQAGL DMLETTLVSL QDITLEKIFD DSGRKTLCSE  780
FPQIMQQGFG SLQGGICISS MGRPVSYERA VAWKVLNEEE NTHCICFVFI NWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.224060.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107147.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107147.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM4DCU80.0M4DCU8_BRARP; Uncharacterized protein
STRINGBra014315.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]