PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107169.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 200aa    MW: 21984.4 Da    PI: 9.3696
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56.1e-383190261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++++l+cprC s ntkfCyynny+lsqPr+fCk+CrryW kGG+lrn+PvGgg+rkn ++
  XP_009107169.1 31 EQEQLNCPRCASPNTKFCYYNNYNLSQPRHFCKNCRRYWPKGGSLRNIPVGGGTRKNSSK 90
                    57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.9E-313389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.2673589IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-233786IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQEDLTSAAA YYHHQSMIMT AKQQQQPELP EQEQLNCPRC ASPNTKFCYY NNYNLSQPRH  60
FCKNCRRYWP KGGSLRNIPV GGGTRKNSSK RSSVGSSSSA PSSSSPKSKT VAVSDQESRT  120
TGNSGQEMDP TRMLYGLPVG DPSGGRFSSL LVSNMQQIRG VNYETGSGWY PGMELGLGSG  180
IRRNDDAALT DLAMNRVEKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.28540.0bud| leaf| seed| silique
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107169.11e-148PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821558e-90DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLM4DCT01e-147M4DCT0_BRARP; Uncharacterized protein
STRINGBra014297.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.19e-76DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]