PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107175.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 309aa    MW: 33579.2 Da    PI: 6.4452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.3e-16226261134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_009107175.1 226 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANKG 261
                     ****865556***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51380115IPR010399Tify domain
SMARTSM009797.6E-1180115IPR010399Tify domain
PfamPF062003.1E-1182114IPR010399Tify domain
PfamPF062031.1E-15150192IPR010402CCT domain
PROSITE profilePS5101713.096150192IPR010402CCT domain
SMARTSM004011.9E-12220273IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.906220268IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12221277No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15224267IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-13225267No hitNo description
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13226261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDDGELHGSN GRMHIGETQD PLHHVHYGHH ALQHIHNGSG MVDDHADTGG GGGMSDGVDT  60
DVPSHPGIIT DNRGEVVDRG SEQGDQLTLS FQGQVYVFDS VLPEKVQAVL LLLGGREVPQ  120
APPAGLGASH QNNRVLGLPG TPQRCSMPQR LASLVRFREK RKERNFDKKI RYTVRKEVAL  180
RMQRNKGQFT SAKSNNGEAA ADGSSWESSQ TWAIEGSEAQ NQEISCRHCG IGEKSTPMMR  240
RGPEGPRTLC NACGLMWANK GALRDLSRGA PQTSQNLQVN NEVSNMQEEA NLEADQMMGT  300
VANDISNSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.270005e-41root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107175.10.0PREDICTED: GATA transcription factor 28 isoform X1
RefseqXP_018509396.10.0PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0D3BMQ80.0A0A0D3BMQ8_BRAOL; Uncharacterized protein
STRINGBo3g181450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-170ZIM-LIKE 2