PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009107184.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

EIL

Protein Properties

Length: 326aa MW: 37990.2 Da PI: 8.1484

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	275.6	2.1e-84	62	265	56	263
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XX----STTS-HHHHHHHH CS EIN3 56 iLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaisky.qaknlilsgessl.qtersseshslselqDTtlgSLL 148 i k M+k+mevcnaqGfvYgiip++gkp +as +L++WWk+kv+fd+ngp+ai+k+ +++n++ +++++ +++++ +++ l +lqD tlg LL XP_009107184.1 62 ISKCMFKMMEVCNAQGFVYGIIPQNGKPIISASHNLQEWWKDKVRFDLNGPIAIAKHqESNNMVCESNEEGnNIANQLSQKLLRDLQDPTLGWLL 156 6699***************************************************666666665544444999999************* PP HHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--..-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHH CS EIN3 149 salmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqg.tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsake 242 salm hcdppqrrfp ek v pPWWPtG+e ww+ kdqg +ppykkphdlkk wk++vLt+vikh+sp +re + q+k+l +km+ ke XP_009107184.1 157 SALMPHCDPPQRRFPFEKRVRPPWWPTGEEYWWP-----KDQGpAPPYKKPHDLKKSWKIGVLTSVIKHLSPG--TMREIVTQTKSLWNKMTTKE 244 ******************************.....9***********************98..9*************** PP HHHHHHHHTTTTT-S--XXXX CS EIN3 243 sfallsvlnqeekecatvsah 263 ++++++v+ qee+ ++ + + XP_009107184.1 245 KDIWFNVIDQEEASKHENMLN 265 *********9855443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.3E-81	62	256	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.9E-50	138	263	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	4.84E-45	142	258	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGMRSNTGLF FSQPQPIIDD DGHTDDEFDV DKLEKRIWRQ GMRLQRLKER SKNKERDDEQ 60 LISKCMFKMM EVCNAQGFVY GIIPQNGKPI ISASHNLQEW WKDKVRFDLN GPIAIAKHQE 120 SNNMVCESNE EGNNIANQLS QKLLRDLQDP TLGWLLSALM PHCDPPQRRF PFEKRVRPPW 180 WPTGEEYWWP KDQGPAPPYK KPHDLKKSWK IGVLTSVIKH LSPGTMREIV TQTKSLWNKM 240 TTKEKDIWFN VIDQEEASKH ENMLNTSNFE INVGFQDMNS RENNQPICRN RNGLFASSKF 300 HVMPMHDRNI NGNQSCLVEG NQSVNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	5e-46	144	261	6	129	Protein ETHYLENE INSENSITIVE 3
4zds_B	5e-46	144	261	6	129	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107184.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107184.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	3e-94	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A397Y747	0.0	A0A397Y747_BRACM; Uncharacterized protein
STRING	Bo3g179880.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18788	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-96	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]