PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009107298.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 193aa MW: 21752.6 Da PI: 5.0143

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.4	4e-11	31	121	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kv +ps + +++ +p +f+ + g ++ + t+t++++ g + ++ + ++++++++ +G +eF++a+ + eg f+ F +g+s+f +v+ XP_009107298.1 31 FIKVILPSTIKE-KMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIGI--KRTGNEVWVDNGCSEFAEAHSISEGHFLYFCSEGNSSF--RVM 117 677776665555.56******.565..44777************..*****************************9898999..999 PP EE-S CS B3 96 vfrk 99 +f+ XP_009107298.1 118 IFDV 121 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.51E-16	25	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.2E-15	27	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.13E-12	29	120	No hit	No description
Pfam	PF02362	5.3E-9	31	120	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-10	31	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MNTTRRASAR ITSAASQRRQ KPEPEPAVKK FIKVILPSTI KEKMMKIPAR FVRLGPKLTD 60 TVTIQTPVGF KRSIGIKRTG NEVWVDNGCS EFAEAHSISE GHFLYFCSEG NSSFRVMIFD 120 VSASEIDYPM DKVHVIESDD DEVMEVMDTD DGEGFTRVDS SDNDSSDEEA IDLEKLLKKK 180 PRVNVKFETI NID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107298.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107298.1	1e-141	PREDICTED: B3 domain-containing protein At1g49475 isoform X1
Swissprot	Q9XIB4	2e-77	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	M4DCH7	1e-138	M4DCH7_BRARP; Uncharacterized protein
STRING	Bra014191.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	2e-60	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]