PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009107887.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CAMTA

Protein Properties

Length: 909aa MW: 103421 Da PI: 7.7443

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009107887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.3	1.8e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r XP_009107887.1 30 EEaYTRWLRPNEIHALLSNHNYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVR 124 55589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ XP_009107887.1 125 RCYWLLDKSQEHIVLVHYRETH 146 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.622	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-44	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.26E-13	361	447	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.57E-13	535	657	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.9E-15	548	660	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.5E-7	548	627	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.71E-15	556	663	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	565	630	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	598	627	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	598	630	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.181	747	773	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	762	784	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.3E-4	785	807	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	786	810	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.4E-5	787	807	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	861	883	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	862	891	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MAGVDSGRLI GSEIHGFHTL QDLDIRTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHVSAK PVTEDINSGV 180 RNACNTARSN SLVARNHEIS LHEINTLDWD ELLVETDDVL YFTEQLQTAA MGSAQQGNHH 240 AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS ATVADEQGDA 300 LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH SQSNIPEQVF 360 NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL QMGVYRCFLP 420 PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKVVPQE DQLYKWEEFE FQVRLSHLLF 480 TSSSKISVFS SRISADNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD QARDPLFELT 540 LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI SLDFRDKHGW 600 TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY EGLAAFLAEK 660 CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA AEAAARIQGA 720 FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI QYRFQTWKMR 780 REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF RGLQVSQPEE 840 KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE EAQLEYDGMQ 900 ELNQMDIES

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MAGVDSGRLI GSEIHGFHTL QDLDIRTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHVSAK PVTEDINSGV  180
RNACNTARSN SLVARNHEIS LHEINTLDWD ELLVETDDVL YFTEQLQTAA MGSAQQGNHH  240
AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS ATVADEQGDA  300
LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH SQSNIPEQVF  360
NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL QMGVYRCFLP  420
PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKVVPQE DQLYKWEEFE FQVRLSHLLF  480
TSSSKISVFS SRISADNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD QARDPLFELT  540
LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI SLDFRDKHGW  600
TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY EGLAAFLAEK  660
CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA AEAAARIQGA  720
FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI QYRFQTWKMR  780
REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF RGLQVSQPEE  840
KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE EAQLEYDGMQ  900
ELNQMDIES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.17287	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009107887.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107887.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	M4FAC6	0.0	M4FAC6_BRARP; Uncharacterized protein
STRING	Bra038040.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]