PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107915.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 246aa    MW: 27185.1 Da    PI: 4.7617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13180225655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_009107915.1 180 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 225
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-11178229No hitNo description
Gene3DG3DSA:4.10.280.108.2E-16179237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10180225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQSTDGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EDDLKPNLCL TELLTGSSAR  60
DSFEFPSSAE QGLYNHQGGG FHRQNSTPAD FLSGSGAGTD GYFSNFGIPA NYDYLPPNVD  120
ISPASKRSRE IEAQFSSQMK EEQMSGGVSG MMDINMDKLL EDSVPCRVRA KRGCATHPRS  180
IAERVRRTRI SDRIRRLQEL VPNMDKQTNT ADMLEEAVEY VKALQSKIQE LTEQQRRCIC  240
KPKEEQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117911e-177AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937941e-177AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107915.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-139BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0D3DKJ61e-180A0A0D3DKJ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G2J11e-180A0A3P6G2J1_BRAOL; Uncharacterized protein
STRINGBo8g026850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-126bHLH family protein