PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107919.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 95aa    MW: 10870 Da    PI: 8.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-091257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + +  +   +W+ +a+ +g g+t +++k ++ 
   XP_009107919.1 12 GSWTAKQNKAFEQALATYDQDtpnRWHNVAQVVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9964IPR017884SANT domain
SMARTSM007172.0E-81062IPR001005SANT/Myb domain
PfamPF002493.9E-71257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-51366IPR009057Homeodomain-like
SuperFamilySSF466896.65E-131367IPR009057Homeodomain-like
CDDcd001677.34E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSVSSHS SGSWTAKQNK AFEQALATYD QDTPNRWHNV AQVVGGKTTE EVKRHYELLV  60
QDINSIENGL VPFPNYNTNG RLFQEEKRMR NMRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-35695293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107919.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-146AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896351e-146AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107919.16e-67PREDICTED: protein RADIALIS-like 1
RefseqXP_013640791.16e-67protein RADIALIS-like 1
RefseqXP_013687135.16e-67protein RADIALIS-like 1
SwissprotF4JVB82e-51RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A398ANA91e-65A0A398ANA9_BRACM; Uncharacterized protein
STRINGBra011870.1-P1e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-52RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]