PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108291.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 243aa    MW: 26602 Da    PI: 10.7721
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.79.2e-11491012071
        trihelix  20 rlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr 71 
                     +lrrg+l++++W++v++ +   +g  ++++qC++k+e+l+kry+ +k++   +
  XP_009108291.1  49 ALRRGNLRAADWDDVAASLpTFGGPAKTAIQCRHKIEKLRKRYRGEKQRCLTK 101
                     6789***************6667889********************9986555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-1152117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNPPSPPPSI LPPPSPSRPP LPGESRLRAG PTRRPPRSSM PTKTSGSFAL RRGNLRAADW  60
DDVAASLPTF GGPAKTAIQC RHKIEKLRKR YRGEKQRCLT KPGKFSSSGD LFPVLDAMEL  120
ASVTSTAVEP NDQDVDRENE SNGVDGFRVR SKRSLVSTPR DGFGVKSQMR MYGGFKPEFD  180
SDHDSGGGFG SKRRYNGHPK FNADSDDEIL LAPKATRLRG SHGKLSSGEF SFLLTGTYQI  240
RMV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108291.11e-176PREDICTED: uncharacterized protein LOC103833990 isoform X1
RefseqXP_018509389.11e-176PREDICTED: uncharacterized protein LOC103833990 isoform X1
RefseqXP_018509390.11e-176PREDICTED: uncharacterized protein LOC103833990 isoform X1
RefseqXP_018509391.11e-176PREDICTED: uncharacterized protein LOC103833990 isoform X1
TrEMBLM4DX261e-175M4DX26_BRARP; Uncharacterized protein
STRINGBra021072.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-14Trihelix family protein