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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009108302.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 530aa MW: 58426.1 Da PI: 5.9481 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009108302.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 395.2 | 7.1e-121 | 153 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+Lle A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e + e ++++ +++e++P+ kf++
XP_009108302.1 153 LKEVLLEGARAVADGDFATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAY 244
5789*****************************************************************9...99999999************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+aN aIlea++g++r+H+iDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l +ge+La++A+++gvpfef+ + + +
XP_009108302.1 245 TAANAAILEATAGDNRIHVIDFQIAQGSQYMFLIHELAKRPGGPPLLRVTGVDDSQSYyaRGGGLTLVGEKLANMAKSCGVPFEFHD-AIMSGCE 338
******************************************************998899999************************.7888999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr++++ri
XP_009108302.1 339 VHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPRLVTLVEQESNTNTSPFLSRFAETLDYYTAMFESIDAARPRDDKQRI 433
99********************************************************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p++ +aa a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
XP_009108302.1 434 SAEQHCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVGGSAAFAASEMLKGYDKN-YKLGGSDGALYLFWKRRPMATCSAWK 523
**************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 530 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNGSSKESFF TLESSTASGT TLPSYDSPSS 60
VSIKSGRSPF SPQGSHSCIS DPHPSPENVY ESSLTAASSY IYDEAGVKSK IRELEDTLLS 120
SDPKVEEYSG FSPAAGKSWN WDELLALTPQ LDLKEVLLEG ARAVADGDFA TACGFIDVLE 180
QMVSVSGSPI QRLGAYMAEG LRARLEGSGG NIYRALKCNE PTGRELMSYM GVLYEICPYW 240
KFAYTAANAA ILEATAGDNR IHVIDFQIAQ GSQYMFLIHE LAKRPGGPPL LRVTGVDDSQ 300
SYYARGGGLT LVGEKLANMA KSCGVPFEFH DAIMSGCEVH REHLGVEPGF AVVVNFPYVL 360
HHMPDESVSV ENHRDRLLHL IKSLGPRLVT LVEQESNTNT SPFLSRFAET LDYYTAMFES 420
IDAARPRDDK QRISAEQHCV ARDIVNMIAC EERERVERHE VLGKWRVRMM MAGFVGWPVG 480
GSAAFAASEM LKGYDKNYKL GGSDGALYLF WKRRPMATCS AWKPNLNQIV
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
