PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108336.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 508aa    MW: 56277.2 Da    PI: 7.4808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_009108336.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11545No hitNo description
CDDcd002029.25E-16655No hitNo description
PfamPF003206.5E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139191.3E-10261355IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYAPLHA RADGEENQDH  60
QRYQRMKSIS LSNKNTETKM LKRKAIQESL PNKRPVLEFN YGLKKAMIEE DASNRSSSGS  120
AISNTESCAQ FSSAGDGSEL NAWETTVPCK RRTCVGRPKT SSSVEKLTKD LFNILQEQQQ  180
SSVSSEGEDL LFESMFSAEI GHGSVLMMDP PHSFAREEES EASSLSSISD AYSHSVKRAE  240
IGAVRGSEFV GQAVKQEQLK RTKSQTGRVH VLGSHSSPLC TIDLKDVFNF DEFTEQFTEE  300
EQKKLMKLLP QIDSVNLPDS LRMMFESAQF KENFSLFQKL IADGVFEMPS SSGAKLEDIR  360
AFKKLALSDF NKSRLVESYN HLKEREKGTG DSVTTTTSRS SLNPNVPKTI VTIKKHCENQ  420
TQVKSESRGL MRSPKSVTKM KASDESKVLT ENNGSCFSPR SLASVFAQES GGTTLFGNEN  480
NCSSDQDLLL MDLPSNGSFP QAELLHQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108336.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLM4DWZ50.0M4DWZ5_BRARP; Uncharacterized protein
STRINGBra021041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26