PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108472.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 209aa    MW: 24255.4 Da    PI: 8.1995
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.9e-1233681549
                    HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
          SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                     R +++lKKA ELS+LCd +++vi +  +g+l  +y
  XP_009108472.1 33 LREKTVLKKALELSILCDNDICVIHYDREGNLvNTY 68
                    599***********************9999872456 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00361170IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-1319105IPR002100Transcription factor, MADS-box
PfamPF003194.5E-73464IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.2783471IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDSLSSSTST KMKNNNKLSV RNETRFKKSF LLLREKTVLK KALELSILCD NDICVIHYDR  60
EGNLVNTYPE DQCQVKDILE RYNNLSDTEK IKKNTNLSQF YNKKLVDEKR RSLTDAEERK  120
KFTKKVGEFK GSLVDQLLVL QDRARYLLYS QDHQTKPDQS RCLAAMSEQN HNFSAPSSGF  180
FPHNDFSSSL IDEEDPLMNF CPPVTENRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108472.11e-153PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLM4DWM91e-152M4DWM9_BRARP; Uncharacterized protein
STRINGBra020923.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.11e-31AGAMOUS-like 54