PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108520.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 162aa    MW: 18187.7 Da    PI: 5.0641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000133361855
                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + + eL +llP+     s+ l   + L +A +YIk+Lq
  XP_009108520.1  3 DLYLELNSLLPQT----SRELPLPDQLDEAANYIKELQ 36
                    7789********8....799*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.67135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-5147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-4454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEDLYLELNS LLPQTSRELP LPDQLDEAAN YIKELQVSVE KNRERKRKLV TTAALEKLNS  60
TGSSSMSSSV DVSVPKRLPR IEIQETGPIF HISLVTSLEH KFMFHEIIRV LTEELGAGLT  120
HAGYSIVDDA VFHIFDCKVE DCDFGATSRI SENLKKLVNS VN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108520.11e-116PREDICTED: uncharacterized protein LOC103834211
SwissprotF4JIJ75e-70BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3P6BP331e-115A0A3P6BP33_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4DWI41e-115M4DWI4_BRARP; Uncharacterized protein
STRINGBra020878.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-71bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]