PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108916.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 499aa    MW: 56259.9 Da    PI: 6.4465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108916.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-1323911798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++  +f+++h ++      l + d+s + W+vkl  ++++   + ++GW+eF+ka+  ++gD +vF++dg++ f  +v+v  
  XP_009108916.1 23 TVDDEFLRKHTKV------LLISDSSDKIWKVKL--DGSR---LAGGGWEEFAKAHSFRDGDLLVFRHDGDEIF--HVSVSP 91
                    5566777777644......78889**********..8888...889**********************999999..777654 PP
2B367.42.1e-21159251598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W+++l+ + +sg +++++GW +F++angL +gD++ Fkl++ +++++v++++ 
  XP_009108916.1 159 RVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLRLSKNSTSGVFYIRQGWVNFCSANGLSQGDICKFKLSE-NGERPVLRLCP 251
                     578999999*********7666444556669***************77777777*************************987.67779999886 PP
3B369.16.1e-22292389199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l++ ++ ++v
  XP_009108916.1 292 FLTVKLTPNRLQTGQLYISSVFVNESGIKK--SGEITLMNKDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLELIW-EDDNPV 383
                     77888999***************9999885..458***************9966655556****************************.77789* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  XP_009108916.1 384 FKFCSK 389
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.731193IPR003340B3 DNA binding domain
SMARTSM010191.8E-121093IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-122791IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-82789IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-112889IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-102889No hitNo description
PROSITE profilePS5086314.819155252IPR003340B3 DNA binding domain
SMARTSM010192.9E-24155253IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-19158253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18160252IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-19160251IPR003340B3 DNA binding domain
CDDcd100172.03E-19165251No hitNo description
Gene3DG3DSA:2.40.330.102.3E-20287389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20289391IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-28292390IPR003340B3 DNA binding domain
CDDcd100173.12E-16292388No hitNo description
PROSITE profilePS5086313.112292392IPR003340B3 DNA binding domain
PfamPF023625.3E-23292389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MTIPPTFSLF HHRFITGDKP VLTVDDEFLR KHTKVLLISD SSDKIWKVKL DGSRLAGGGW  60
EEFAKAHSFR DGDLLVFRHD GDEIFHVSVS PRSDSCDISH HASPSLVDTD DVETDDDYSE  120
SDDGEDEYDD DDDGGEDDAG NIMVNKNTKA GFSCILRARV TPYSLIKDRL DLSKDFTVVS  180
FNEHNKPCEI DLVNEKGRKW TLRLSKNSTS GVFYIRQGWV NFCSANGLSQ GDICKFKLSE  240
NGERPVLRLC PSSNSHEEEE ECLEADAVKT SSIRGCSKEK RKGKKKNSPS QFLTVKLTPN  300
RLQTGQLYIS SVFVNESGIK KSGEITLMNK DGRKWPSYLQ MTGQCGSEWF YLRHGWREMC  360
KANGVKVNDS FVLELIWEDD NPVFKFCSKA ENKGNGNGRL RKKRACETSI VETERRKRGR  420
PRVSNTNSSN LQRTRQESCS VSDQVASVKL SILDTLNTVR QFRADIEARE KNLEASSLEV  480
DALGERILGI SQILNNNLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401417KKRACETSIVETERRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108916.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X2
RefseqXP_013720407.10.0B3 domain-containing protein REM1-like isoform X2
RefseqXP_022545721.10.0B3 domain-containing protein REM1-like isoform X2
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D1790.0M4D179_BRARP; Uncharacterized protein
STRINGBra010228.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-167B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]