PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109014.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 834aa    MW: 94522.8 Da    PI: 4.4369
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-104605031053
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +e L ++F++n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  XP_009109014.1 460 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPEKVSKWFKNTRY 503
                     67899*************************************97 PP
2PHD40.94.8e-14189244151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_009109014.1 189 FCAECNSreASLDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDCK 244
                     6999**965555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.75E-13181246IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.2E-12185244IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.03187244IPR019787Zinc finger, PHD-finger
SMARTSM002496.5E-10189242IPR001965Zinc finger, PHD-type
CDDcd155042.36E-31189241No hitNo description
PfamPF006283.3E-11189244IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590190241IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.8E-12435502IPR009057Homeodomain-like
SuperFamilySSF466894.06E-10448512IPR009057Homeodomain-like
PROSITE profilePS5007112.617448508IPR001356Homeobox domain
SMARTSM003899.8E-11450512IPR001356Homeobox domain
CDDcd000866.80E-8451503No hitNo description
PfamPF000465.3E-8460503IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MGESETKGKV KKETEKACVS VERVESTLLS SLVKKKGKET TSKRKYNKRK TEEEICSKSS  60
NKKYSRGLEE EEEEGKKTRK RKSKRQQKDS NKVEEVDEAL RLQRRTRYLL IKIKMQQNLI  120
DAYAAEGWKG QSREKIRPDK ELERARKHIL DCKLGLRDAI RQLEHLSSVG RMEEKVMAPD  180
GSIHHDHIFC AECNSREASL DNDIILCDGT CNRAFHQKCL DPPLETESIP PGDQGWFCKI  240
CDCKIEIIDT MNAQIGTQYP VDSNWQDIFN EEANLPVGSE ATLNKDADWP SDDSEDGDYD  300
PEMKERNSSR SDSGGGGGGD NDGGSSSTSV SLASDGVALS TGSWEGHGFG NVVESGEASN  360
EETVHGPRQR KSVDYTKLYH EMFGKDAVLQ EQGSEDEDWG PSNRRKRRKE SDAASTVVTM  420
CENSKKDEDV VEEVQEQSER DSVSVGGKGG RRPIFRIPRA AVEKLRQVFA ENELPSKSVR  480
DSLSKELSLD PEKVSKWFKN TRYMALRNRK AESVKQPEES KVFLSGDSGP EAVMEKNTEA  540
DESHDNMEES VMEKTTETNE IQETDDETVM ETNTDTNQIQ ETMEETVMEK KTESNVIQET  600
MDEAVMEKNT EANETQDTMD EAVMEERTEA NEIQQETMEE TIMEKTTEAH EVQDSMDDET  660
NTETNEIQET VDEAVLETNT ETNEVQNTID KSVPLKFNDP TNQTTASPCH DDNQEETQHA  720
NESFPTPIEE ENQQYLEQKD SSLTLPPHEE VSSEMSLETS LEDKERKEVE EFEAVMEMLC  780
RAENKLLDVT QRLERFRTPK GRKKLGKSSS CLHEEDSVVY VPTPEIKEGR SKLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782TRKRKS
2404409RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109014.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM4D1G00.0M4D1G0_BRARP; Uncharacterized protein
STRINGBra010310.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]