PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109015.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 663aa    MW: 74532.9 Da    PI: 4.0852
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.91.1e-102893321053
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +e L ++F++n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  XP_009109015.1 289 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPEKVSKWFKNTRY 332
                     67899*************************************97 PP
2PHD41.33.6e-141873151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD  1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
                    +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_009109015.1 18 FCAECNSreASLDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDCK 73
                    6999**965555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.3E-131075IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.9E-121473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.031673IPR019787Zinc finger, PHD-finger
CDDcd155046.46E-311870No hitNo description
PfamPF006282.5E-111873IPR019787Zinc finger, PHD-finger
SMARTSM002496.5E-101871IPR001965Zinc finger, PHD-type
PROSITE patternPS0135901970IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.1E-12264331IPR009057Homeodomain-like
PROSITE profilePS5007112.617277337IPR001356Homeobox domain
SuperFamilySSF466892.99E-10277341IPR009057Homeodomain-like
SMARTSM003899.8E-11279341IPR001356Homeobox domain
CDDcd000861.36E-8280332No hitNo description
PfamPF000464.0E-8289332IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEEKVMAPDG SIHHDHIFCA ECNSREASLD NDIILCDGTC NRAFHQKCLD PPLETESIPP  60
GDQGWFCKIC DCKIEIIDTM NAQIGTQYPV DSNWQDIFNE EANLPVGSEA TLNKDADWPS  120
DDSEDGDYDP EMKERNSSRS DSGGGGGGDN DGGSSSTSVS LASDGVALST GSWEGHGFGN  180
VVESGEASNE ETVHGPRQRK SVDYTKLYHE MFGKDAVLQE QGSEDEDWGP SNRRKRRKES  240
DAASTVVTMC ENSKKDEDVV EEVQEQSERD SVSVGGKGGR RPIFRIPRAA VEKLRQVFAE  300
NELPSKSVRD SLSKELSLDP EKVSKWFKNT RYMALRNRKA ESVKQPEESK VFLSGDSGPE  360
AVMEKNTEAD ESHDNMEESV MEKTTETNEI QETDDETVME TNTDTNQIQE TMEETVMEKK  420
TESNVIQETM DEAVMEKNTE ANETQDTMDE AVMEERTEAN EIQQETMEET IMEKTTEAHE  480
VQDSMDDETN TETNEIQETV DEAVLETNTE TNEVQNTIDK SVPLKFNDPT NQTTASPCHD  540
DNQEETQHAN ESFPTPIEEE NQQYLEQKDS SLTLPPHEEV SSEMSLETSL EDKERKEVEE  600
FEAVMEMLCR AENKLLDVTQ RLERFRTPKG RKKLGKSSSC LHEEDSVVYV PTPEIKEGRS  660
KLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109015.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109014.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM4D1G00.0M4D1G0_BRARP; Uncharacterized protein
STRINGBra010310.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-168pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]