PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109087.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 347aa    MW: 39874.6 Da    PI: 6.4579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-49101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL++k+++k+   +                  + e+d++ +ePw+Lp  +k + kewyfFs rd+ky tg r+nrat 
  XP_009109087.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSlhcN---VedddvdealqdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYCTGYRTNRATV 101
                     79*************************5540...24466777777774599*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  XP_009109087.1 102 SGYWKATGKDRTVIDPrTRQLVGMRKTLVFYRNRAPHGIKTTWIMHEFRLE 152
                     **************9967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-568170IPR003441NAC domain
PROSITE profilePS5100553.19310170IPR003441NAC domain
PfamPF023651.3E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN VEDDDVDEAL QDATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY CTGYRTNRAT VSGYWKATGK DRTVIDPRTR  120
QLVGMRKTLV FYRNRAPHGI KTTWIMHEFR LECPNMLPKE DWVLCRVFNK GRDLSLQDNN  180
NDHLTRRFAV NGAPDLNYAP NYNNQLHPLL SSSPSTTIDP LHHLDQWGQL MKQPSRTTDH  240
PYHHHCKHQT IACGWEQMMG SMSSSSTHGH DHESLLNLLY ADNNNNINVT DDQYIQNYEK  300
ILFPSDSTSL DHDKICMGTS SDGGMVSNPR MECGGLSFET DNPLSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-471017015168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109087.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109087.10.0PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A3P6CC380.0A0A3P6CC38_BRACM; Uncharacterized protein
TrEMBLM4D1L20.0M4D1L2_BRARP; Uncharacterized protein
STRINGBra010362.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-158NAC domain containing protein 74