PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109443.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 258aa    MW: 29209 Da    PI: 6.9507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1894144256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAe r p++   r r +lg+f taeeAa a+++a+ kl+ge
  XP_009109443.1  94 LYRGVRQRH-WGKWVAETRLPKN---RPRLWLGTFNTAEEAAMAYDRAAYKLRGE 144
                     59******9.*******999865...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.47E-3393152No hitNo description
Gene3DG3DSA:3.30.730.104.5E-3094151IPR001471AP2/ERF domain
SMARTSM003806.4E-3494157IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2294152IPR016177DNA-binding domain
PROSITE profilePS5103222.36694151IPR001471AP2/ERF domain
PfamPF008472.2E-1395144IPR001471AP2/ERF domain
PRINTSPR003679.9E-1195106IPR001471AP2/ERF domain
PRINTSPR003679.9E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAIDMFNSS TNLSDPFKEE LMKVLKPFTN SVSSLPPIPN PIFGFNQTTP LGLNQLTPYQ  60
IHQIQNQLNQ RRNPTTSTLS PKPVAMKNMT AQKLYRGVRQ RHWGKWVAET RLPKNRPRLW  120
LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEFGDS RFKALHPSVE AKLEAICQSL  180
GKTELLPPKA EYQESECRWS LRADESLFSD ESQVGSSSPG TLLDFSDSGF DDESGSYVLE  240
KFPSVEIDWD AISKLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2093151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2093151463ATERF1
3gcc_A2e-2093151463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892601e-163AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109443.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-129ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLM4D2F70.0M4D2F7_BRARP; Uncharacterized protein
STRINGBra010657.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-111ERF family protein