PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109512.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 180aa    MW: 19761.1 Da    PI: 5.9294
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC+ C ++ H
  XP_009109512.1  4 LCDACENAAAIVFCAADEAALCRPCDEKVH 33
                    6*******9******************998 PP
2zf-B_box26.71.1e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_009109512.1 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    789***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.224147IPR000315B-box-type zinc finger
CDDcd000211.42E-6345No hitNo description
SMARTSM003361.5E-7447IPR000315B-box-type zinc finger
PfamPF006433.0E-5442IPR000315B-box-type zinc finger
SMARTSM003362.2E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9165196IPR000315B-box-type zinc finger
PfamPF006431.7E-65291IPR000315B-box-type zinc finger
CDDcd000211.33E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKQ NNTRDNMQNQ  120
RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHESAG VGPFKRESEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165250.0bud
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937280.0AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109512.11e-132PREDICTED: B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-124BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM4D2L51e-130M4D2L5_BRARP; Uncharacterized protein
STRINGBra010718.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-126DBB family protein