PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109516.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 285aa    MW: 31965.4 Da    PI: 9.9723
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind60.67.2e-191110192
       GAGA_bind   1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 
                     m++ g+++  r k+ yy+                 ++++l   +++++ms++aerda+++ern al++kk+a+a+rd+a+ qrdkal+er++a++
  XP_009109516.1   1 MESGGQYDngRYKPdYYKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEALAAKKEALAARDEALEQRDKALSERDNAIM 93 
                     889999988999999999**********9887765446666..99************************************************** PP

       GAGA_bind  76 erdnkllalllvensla 92 
                     er+ +l al + e++  
  XP_009109516.1  94 ERETALNALHYPEKNNL 110
                     *******9998777644 PP
2GAGA_bind247.11.1e-75144285158301
       GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
                     ++++k++k+ kk +++ ++  ++++  ++ +++++  +++ln v++De+t+PvP+C+CtG+ rqCYkWG+GGWqS+CCttt+S++PLP+++++r+
  XP_009109516.1 144 TKRKKETKQGKKVGDDLNRLAASPG--KKCRKDWDVNEVGLNLVAFDETTMPVPMCTCTGTARQCYKWGSGGWQSSCCTTTLSQHPLPQMPNKRH 236
                     2222223344555677777777777..57****************************************************************** PP

       GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +R++grKmS+++f++lL++La+eG dls pvDLkd+WA+HGtn+++ti+
  XP_009109516.1 237 SRMGGRKMSGNVFSRLLSRLAGEGQDLSSPVDLKDYWARHGTNRYITIK 285
                     ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.8E-1441285IPR010409GAGA-binding transcriptional activator
PfamPF062174.4E-8618285IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MESGGQYDNG RYKPDYYKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER  60
NEALAAKKEA LAARDEALEQ RDKALSERDN AIMERETALN ALHYPEKNNL NYILSCAKRG  120
GTEGRSHPPR PPPVSPIPAD KNPTKRKKET KQGKKVGDDL NRLAASPGKK CRKDWDVNEV  180
GLNLVAFDET TMPVPMCTCT GTARQCYKWG SGGWQSSCCT TTLSQHPLPQ MPNKRHSRMG  240
GRKMSGNVFS RLLSRLAGEG QDLSSPVDLK DYWARHGTNR YITIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.128350.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109516.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-163BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A397YJF40.0A0A397YJF4_BRACM; Uncharacterized protein
TrEMBLM4D2L70.0M4D2L7_BRARP; Uncharacterized protein
STRINGBra010720.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-132basic pentacysteine 5