PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109674.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 200aa MW: 21518.9 Da PI: 9.6093

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	25	84	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s XP_009109674.1 25 QEQLNCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGTRKNAKRS 84 7899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.9E-33	26	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MQDPAAYYQS MMAKQQQQQP QFPVQEQLNC PRCDSPNTKF CYYNNYNLSQ PRHFCKSCRR 60 YWTKGGALRN VPVGGGTRKN AKRSTSSPTS PSNNKKTKNT DPDPNSQTGN KPDTDPTRML 120 YGFPIGDQDV KGMEMGGGGG SFSSLLASNM QLGLGGIILD GSGWDPGMGL RRSEAGNGGG 180 GGGGGGNPWT DLALNRVEKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3871	1e-165	flower\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109674.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189344	0.0	AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109674.1	1e-146	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	Q94AR6	2e-85	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	A0A3P5ZWV0	1e-144	A0A3P5ZWV0_BRACM; Uncharacterized protein
TrEMBL	M4E534	1e-144	M4E534_BRARP; Uncharacterized protein
STRING	Bra023888.1-P	1e-145	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	5e-67	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]