PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109754.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 234aa MW: 26431.7 Da PI: 5.308

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	37	86	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g XP_009109754.1 37 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 86 79*****.******965...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.1E-28	37	94	IPR001471	AP2/ERF domain
CDD	cd00018	2.34E-31	37	93	No hit	No description
SuperFamily	SSF54171	2.88E-21	37	95	IPR016177	DNA-binding domain
Pfam	PF00847	3.1E-13	37	86	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-32	37	100	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.246	37	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-9	38	49	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-9	60	76	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDFNGNSYAG SSSRSKKSHR QKQQQQQPQP QHNEDIKYVG VRRRPWGRYA AEIRNPTTKE 60 RYWLGTFDTA EEAALAYDRA ARSIRGLTAR TNFVYSDMPR GTSVTSFISP DESQRFISEL 120 FNPSSQLEAT NNINNNNNNL NSSTNNGWPH ESECGYQCIN TNDEHCDHEL PPFPPSTCFG 180 AELMIPETDS YWNVVHASMN TFSFEPDGFV GQNSLGESGT KGFDCSSSTF FYQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	34	93	11	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109754.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021044	1e-134	AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBank	AC069471	1e-134	AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBank	CP002684	1e-134	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ446295	1e-134	DQ446295.1 Arabidopsis thaliana clone pENTR221-At1g28160 ethylene-responsive element-binding family protein (At1g28160) mRNA, complete cds.
GenBank	DQ652864	1e-134	DQ652864.1 Arabidopsis thaliana clone 0000018995_0000013096 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109754.1	1e-177	PREDICTED: ethylene-responsive transcription factor ERF087-like
Swissprot	Q9FZ90	1e-126	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A397YHJ5	1e-176	A0A397YHJ5_BRACM; Uncharacterized protein
TrEMBL	M4D348	1e-176	M4D348_BRARP; Uncharacterized protein
STRING	Bra010901.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12933	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	1e-104	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]